(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 1SY
File name: alatis_output_compound.sdf
|
Formula: C20H24N10O13P2 Compound mass: 674.4103999999988 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.22
List of identified carbohydrate fragments:
-
C5H7N1O4
Fragment probability: 1.00
Fragment mass: 145.1131
Fragment main chain atoms: [7, 41, 18, 11, 12]
Fragment all atoms: [7, 54, 2, 48, 49, 39, 41, 18, 59, 29, 11, 56, 32, 67, 12, 57, 42]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 1SY | 6NT7 5VDP 4LEZ 6NT8 6DNK 4LOJ 4O67 6MJX 5CFQ 6A06 5GRM 4KSY 4LOH |
| 4UR | 5BQX |
| 9BG | 5VDQ 6EA9 |
| 1YC | 5VDO 4LOI |
| 23G | 6H9I 4C8Z 5CD4 4C9D 5H9E 3QRR 6IF5 6H9H 4QKA 4TVX 5H9F 1VY9 4QK8 4QK9 1VY8 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.