(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 1QZ
File name: alatis_output_compound.sdf
|
Formula: C26H25N5O1 Compound mass: 423.50860000000006 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.00
- Compound probability: 0.06
List of identified carbohydrate fragments:
-
C2
Fragment probability: 0.00
Fragment mass: 49.0507
Fragment main chain atoms: [8, 9]
Fragment all atoms: [8, 9]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 1R0 | 4KFJ |
| 1QZ | 4KEB |
| 06W | 4TU5 3SGY |
| 9DR | 3SAI 4KD7 |
| 06U | 4KAK 4OSG 3RO9 4XE6 4H95 4XEC |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.