• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 1PZ
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.56
• Compound probability: 0.26

List of identified carbohydrate fragments:

• C₆H₉N₁O₁
  Fragment probability: 0.42
  Fragment mass: 84.0963
  Fragment main chain atoms: [25, 29, 32]
  Fragment all atoms: [25, 88, 23, 85, 21, 81, 82, 29, 94, 28, 93, 27, 91, 92, 31, 32, 96]
  

• C₇H₁₁N₁O₂
  Fragment probability: 0.50
  Fragment mass: 128.14870000000002
  Fragment main chain atoms: [27, 28, 29, 25, 23]
  Fragment all atoms: [27, 91, 92, 37, 28, 93, 31, 29, 94, 32, 96, 25, 88, 23, 85, 21, 81, 82, 19, 77, 78]
  

• C₄H₆N₁O₂
  Fragment probability: 0.56
  Fragment mass: 114.12220000000002
  Fragment main chain atoms: [27, 28, 29, 25]
  Fragment all atoms: [27, 91, 92, 37, 28, 93, 31, 29, 94, 32, 96, 25, 88]
  

• C₆H₉O₁
  Fragment probability: 0.46
  Fragment mass: 70.0896
  Fragment main chain atoms: [23, 25]
  Fragment all atoms: [23, 85, 21, 81, 82, 19, 77, 78, 25, 88, 29, 94, 28, 93, 32, 96]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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