(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 1N5
File name: alatis_output_compound.sdf
|
Formula: C7H14O5 Compound mass: 178.1825000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.86
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C7H14O5
Fragment probability: 0.86
Fragment mass: 178.18250000000006
Fragment main chain atoms: [3, 1, 2, 5, 4, 6, 7]
Fragment all atoms: [3, 17, 18, 8, 23, 1, 13, 14, 2, 15, 16, 5, 21, 9, 24, 4, 19, 20, 6, 22, 10, 25, 7, 11, 12, 26]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 1N5 | 3CXO |
| QIC | 3JYP 4IUO 4GUI 6BMQ |
| WPL | 6H5D 4CLM |
| VAU | 4UIO |
| RSH | 1W3T 3NEV |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.