• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 1AG
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.98
• Compound probability: 0.89

List of identified carbohydrate fragments:

• C₃H₇O₃
  Fragment probability: 0.98
  Fragment mass: 91.0856
  Fragment main chain atoms: [20, 22, 21]
  Fragment all atoms: [20, 59, 60, 24, 64, 22, 63, 25, 65, 21, 61, 62, 27]
  

• C₆H₁₁O₄
  Fragment probability: 0.79
  Fragment mass: 117.1228
  Fragment main chain atoms: [20, 22, 21, 27, 23]
  Fragment all atoms: [20, 59, 60, 24, 64, 22, 63, 25, 65, 21, 61, 62, 27, 23, 19, 57, 58, 18, 55, 56, 26]
  

• C₄H₆O₂
  Fragment probability: 0.62
  Fragment mass: 86.089
  Fragment main chain atoms: [21, 27, 23]
  Fragment all atoms: [21, 61, 62, 27, 23, 19, 57, 58, 18, 55, 56, 26]
  

• C₆H₉
  Fragment probability: 0.38
  Fragment mass: 54.090199999999996
  Fragment main chain atoms: [6, 7]
  Fragment all atoms: [6, 39, 5, 37, 38, 4, 35, 36, 7, 40, 8, 41, 42, 9, 43]
  

• C₆H₈
  Fragment probability: 0.33
  Fragment mass: 54.090199999999996
  Fragment main chain atoms: [9, 10]
  Fragment all atoms: [9, 43, 8, 41, 42, 7, 40, 10, 44, 11, 45, 46, 12, 47]
  

• C₆H₈
  Fragment probability: 0.33
  Fragment mass: 54.090199999999996
  Fragment main chain atoms: [12, 13]
  Fragment all atoms: [12, 47, 11, 45, 46, 10, 44, 13, 48, 14, 49, 50, 15, 51]
  

• C₆H₉
  Fragment probability: 0.38
  Fragment mass: 54.090199999999996
  Fragment main chain atoms: [15, 16]
  Fragment all atoms: [15, 51, 14, 49, 50, 13, 48, 16, 52, 17, 53, 54, 18, 55, 56]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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