(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 173
File name: alatis_output_compound.sdf
|
Formula: C8H6O3 Compound mass: 150.13120000000004 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.45
- Compound probability: 0.73
List of identified carbohydrate fragments:
-
C5H3O3
Fragment probability: 0.45
Fragment mass: 69.03880000000001
Fragment main chain atoms: [8, 7]
Fragment all atoms: [8, 11, 10, 17, 7, 6, 4, 5, 15, 16, 9]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 173 | 6A08 3SG0 4MNI 6A19 1SZE 6A1M 5ZZZ 4MNC 6A23 |
| PAC | 4YFB 5ZMQ 2Y4N 1K5Q 6A0M 1PNL 1FXH 3IXL 2ISF 2INE |
| HXT | 3WNQ |
| 9RW | 5OD9 6A0D 6A00 |
| GRO | 1KEC 1K5S 1K7D |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.