• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 0VR
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 1.00
• Compound probability: 0.43

List of identified carbohydrate fragments:

• C₅H₁₀N₁O₄
  Fragment probability: 0.82
  Fragment mass: 132.1374
  Fragment main chain atoms: [6, 10, 11, 9]
  Fragment all atoms: [6, 30, 31, 22, 10, 33, 15, 37, 11, 34, 16, 38, 9, 32, 5, 28, 29, 13, 14, 36]
  

• C₂H₄O₂
  Fragment probability: 1.00
  Fragment mass: 73.0704
  Fragment main chain atoms: [6, 10]
  Fragment all atoms: [6, 30, 31, 22, 10, 33, 15, 37]
  

• C₅H₁₀O₄
  Fragment probability: 0.90
  Fragment mass: 103.09630000000001
  Fragment main chain atoms: [6, 10, 11]
  Fragment all atoms: [6, 30, 31, 22, 10, 33, 15, 37, 11, 34, 9, 32, 5, 28, 29, 14, 36, 16, 38]
  

• C₃H₆N₁O₂
  Fragment probability: 0.71
  Fragment mass: 85.1042
  Fragment main chain atoms: [9, 11]
  Fragment all atoms: [9, 32, 5, 28, 29, 13, 14, 36, 11, 34, 16, 38]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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